The European Physical Journal E (EPJ E)

Open Access

Editorial

Topical Issue on Advances in Computational Methods for Soft Matter Systems

Lorenzo Rovigatti, Flavio Romano and John Russo

Published online: 29 August 2018

DOI: 10.1140/epje/i2018-11695-6

Collective behavior of Vicsek particles without and with obstacles^⋆

Raul Martinez, Francisco Alarcon, Diego Rogel Rodriguez, Juan Luis Aragones and Chantal Valeriani

Published online: 17 August 2018

DOI: 10.1140/epje/i2018-11706-8

Open Access

Implementing efficient concerted rotations using Mathematica and C code^⋆

Luca Tubiana, Miroslav Jurásek and Ivan Coluzza

Published online: 20 July 2018

DOI: 10.1140/epje/i2018-11694-7

On the effect of the thermostat in non-equilibrium molecular dynamics simulations

José Ruiz-Franco, Lorenzo Rovigatti and Emanuela Zaccarelli

Published online: 02 July 2018

DOI: 10.1140/epje/i2018-11689-4

From hydrodynamic lubrication to many-body interactions in dense suspensions of active swimmers

Natsuhiko Yoshinaga and Tanniemola B. Liverpool

Published online: 14 June 2018

DOI: 10.1140/epje/i2018-11683-x

Open Access

KymoKnot: A web server and software package to identify and locate knots in trajectories of linear or circular polymers

Luca Tubiana, Guido Polles, Enzo Orlandini and Cristian Micheletti

Published online: 07 June 2018

DOI: 10.1140/epje/i2018-11681-0

Open Access

Compressibility of ferrofluids: Towards a better understanding of structural properties

Elena S. Minina, Elena S. Pyanzina, Ekaterina V. Novak and Sofia S. Kantorovich

Published online: 25 May 2018

DOI: 10.1140/epje/i2018-11678-7

Open Access

Concurrent coupling of realistic and ideal models of liquids and solids in Hamiltonian adaptive resolution simulations

Maziar Heidari, Robinson Cortes-Huerto, Kurt Kremer and Raffaello Potestio

Published online: 23 May 2018

DOI: 10.1140/epje/i2018-11675-x

Dynamic and thermodynamic crossover scenarios in the Kob-Andersen mixture: Insights from multi-CPU and multi-GPU simulations

Daniele Coslovich, Misaki Ozawa and Walter Kob

Published online: 17 May 2018

DOI: 10.1140/epje/i2018-11671-2

Open Access

Simulating squirmers with multiparticle collision dynamics

Andreas Zöttl and Holger Stark

Published online: 15 May 2018

DOI: 10.1140/epje/i2018-11670-3

How to simulate patchy particles

Lorenzo Rovigatti, John Russo and Flavio Romano

Published online: 14 May 2018

DOI: 10.1140/epje/i2018-11667-x

Open Access

Coarse-grained simulation of DNA using LAMMPS - An implementation of the oxDNA model and its applications

Oliver Henrich, Yair Augusto Gutiérrez Fosado, Tine Curk and Thomas E. Ouldridge

Published online: 10 May 2018

DOI: 10.1140/epje/i2018-11669-8

Open Access

Structural-dynamical transition in the Wahnström mixture

Francesco Turci, Thomas Speck and C. Patrick Royall

Published online: 26 April 2018

DOI: 10.1140/epje/i2018-11662-3

Open Access

Vapor nucleation paths in lyophobic nanopores

Antonio Tinti, Alberto Giacomello and Carlo Massimo Casciola

Published online: 19 April 2018

DOI: 10.1140/epje/i2018-11658-y

Speeding up Monte Carlo simulation of patchy hard cylinders

Alberto Giacomo Orellana, Emanuele Romani and Cristiano De Michele

Published online: 16 April 2018

DOI: 10.1140/epje/i2018-11657-0

Open Access

Molecular dynamics simulations of inverse patchy colloids

Silvano Ferrari, Gerhard Kahl and Emanuela Bianchi

Published online: 28 March 2018

DOI: 10.1140/epje/i2018-11647-2

On the calculation of the potential of mean force between atomistic nanoparticles

Gianmarco Munaò, Andrea Correa, Antonio Pizzirusso and Giuseppe Milano

Published online: 27 March 2018

DOI: 10.1140/epje/i2018-11646-3

“Swarm relaxation”: Equilibrating a large ensemble of computer simulations^⋆

Shahrazad M. A. Malek, Richard K. Bowles, Ivan Saika-Voivod, Francesco Sciortino and Peter H. Poole

Published online: 10 November 2017

DOI: 10.1140/epje/i2017-11588-2

EPJ

The European Physical Journal E - Soft Matter and Biological Physics

Advances in Computational Methods for Soft Matter Systems

Topical Issue on Advances in Computational Methods for Soft Matter Systems

Collective behavior of Vicsek particles without and with obstacles^⋆

Implementing efficient concerted rotations using Mathematica and C code^⋆

On the effect of the thermostat in non-equilibrium molecular dynamics simulations

From hydrodynamic lubrication to many-body interactions in dense suspensions of active swimmers

KymoKnot: A web server and software package to identify and locate knots in trajectories of linear or circular polymers

Compressibility of ferrofluids: Towards a better understanding of structural properties

Concurrent coupling of realistic and ideal models of liquids and solids in Hamiltonian adaptive resolution simulations

Dynamic and thermodynamic crossover scenarios in the Kob-Andersen mixture: Insights from multi-CPU and multi-GPU simulations

Simulating squirmers with multiparticle collision dynamics

How to simulate patchy particles

Coarse-grained simulation of DNA using LAMMPS - An implementation of the oxDNA model and its applications

Structural-dynamical transition in the Wahnström mixture

Vapor nucleation paths in lyophobic nanopores

Speeding up Monte Carlo simulation of patchy hard cylinders

Molecular dynamics simulations of inverse patchy colloids

On the calculation of the potential of mean force between atomistic nanoparticles

“Swarm relaxation”: Equilibrating a large ensemble of computer simulations^⋆

Conference announcements