2014 Impact factor 1.757
Soft Matter and Biological Physics

References

  1. C. Branden, J. Tooze, Introduction to Protein Structure (Graland Publishing, New York, 1991).
  2. D. Poland, H.A. Scheraga, Theory of Helix-Coil Transition in Biopolymers (Academic Press, New York, 1970); C.R. Cantor, P.R. Schimmel, Biophysical Chemistry (Freeman, New York, 1980); A.Y. Grosberg, A.R. Khokhlov, Statistical Physics of Macromolecules (AIP Press, New York, 1994).
  3. M. Rief, F. Oesterhelt, B. Heymann, H.E. Gaub, Science 275, 1295 (1997); M.S.Z. Kellermayer, S.B. Smith, H.L. Granzier, C. Bustamante, Science 276, 1112 (1997); F. Oesterhelt, M. Reif, H.E. Gaub, New. J. Phys. 1, 6.1 (1999).
  4. B.H. Zimm, J.K. Bragg, J. Chem Phys. 31, 526 (1959).
  5. N. Goldenfeld, Lectures on Phase Transitions and the Renormalization Group (Addision-Wesley, New York, 1992).
  6. J. Bond, C. Anderson, M.T. Record jr., Biophys. J. 67, 825 (1994); M.C. Williams, J.R. Wenner, I. Rouzina, V.A. Bloomfield, Biophys. J. 80, 874 (2001); I. Rouzina, V.A. Bloomfield, Biophys. J. 80, 894 (2001).
  7. See, e.g., P. Cluzel, A. Lebrun, C. Heller, R. Lavery, J.L. Viovy, D. Chatenay, F. Caron, Science 271, 792 (1996); S.B. Smith, Y. Cui, C. Bustamante, Science 271, 795 (1996); M.C. Williams, J.R. Wenner, I. Rouzina, V.A. Bloomfield, Biophys. J. 80, 1932 (2001).
  8. A. Ahsan, J. Rudnick, R. Bruinsma, Biophys. J. 74, 132 (1998); I. Rouzina, V.A. Bloomfield, Biophys. J. 80, 882 (2001). See also the following references that deal with stretching of polypeptides using the same theoretical approach: A. Buhot, A. Halperin, Phys. Rev. Lett. 84, 2160 (2000) APS Link; M.N. Tamashiro, P. Pincus, Phys. Rev. E 63, 021909 (2001). APS Link
  9. M. Doi, S.F. Edwards, The Theory of Polymer Dynamics (Oxford University Press, Oxford, 1988). For slightly modified versions of these models see, e.g., J.F. Marko, E.D. Siggia, Macromol. 28, 8759 (1995), or the paper by Smith, Cui and Bustamante in reference [7].
  10. I.V. Soman, A. Karimi, D.A. Case, Biopolymers 31, 1351 (1991); C.A. Schiffer, V. Dötsch, Curr. Opin. Biotechnol. 7, 428 (1996); P. Doruker, I. Bahar, Biophys. J. 72, 2445 (1997); L. D Barron, L. Hecht, G. Wilson, Biochemistry 36, 13143 (1997).
  11. In equation (9) we assume that all the new hydrogen bonds are formed at the interfaces between helix and coil domains. This assumption applies to the case when the free-energy gain in creating such a new bond is much larger than the free-energy gain in replacing an existing bond between a coil monomer and a water molecule, with a bond between a coil monomer and impurity.

Abstract

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